dMod - Dynamic Modeling and Parameter Estimation in ODE Models
The framework provides functions to generate ODEs of reaction networks, parameter transformations, observation functions, residual functions, etc. The framework follows the paradigm that derivative information should be used for optimization whenever possible. Therefore, all major functions produce and can handle expressions for symbolic derivatives.
Last updated 6 days ago
7.93 score 19 stars 251 scripts 267 downloadscOde - Automated C Code Generation for 'deSolve', 'bvpSolve'
Generates all necessary C functions allowing the user to work with the compiled-code interface of ode() and bvptwp(). The implementation supports "forcings" and "events". Also provides functions to symbolically compute Jacobians, sensitivity equations and adjoint sensitivities being the basis for sensitivity analysis.
Last updated 3 years ago
6.72 score 11 stars 4 packages 197 scripts 540 downloads