Package: cOde 2026.06
cOde: Automated C Code Generation for 'deSolve', 'bvpSolve'
Generates all necessary C functions allowing the user to work with the compiled-code interface of ode() and bvptwp(). The implementation supports "forcings" and "events". Also provides functions to symbolically compute Jacobians, sensitivity equations and adjoint sensitivities being the basis for sensitivity analysis.
Authors:
cOde_2026.06.tar.gz
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cOde_2026.06.tgz(r-4.6-any)cOde_2026.06.tgz(r-4.5-any)
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
cOde/json (API)
| # Install 'cOde' in R: |
| install.packages('cOde', repos = c('https://dkaschek.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dkaschek/code/issues
- forcData - Forcings data.frame
- oxygenData - Time-course data of O, O2 and O3
Last updated from:7fe198d704. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 150 | ||
| source / vignettes | OK | 153 | ||
| linux-release | OK | 107 | ||
| macos-release | OK | 167 | ||
| macos-oldrel | OK | 171 | ||
| windows-devel | OK | 72 | ||
| windows-release | OK | 72 | ||
| windows-oldrel | OK | 60 | ||
| wasm-release | OK | 67 |
Exports:adjointSymbbvptwpCfunCgetSymbolsjacobianSymbodeCprodSymbreduceSensitivitiesreplaceNumbersreplaceOperationreplaceSymbolssensitivitiesSymbsetForcingssumSymb
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Automated C Code Generation for Use with the "deSolve" and "bvpSolve" Packages | cOde-package cOde |
| Compute adjoint equations of a function symbolically | adjointSymb |
| Interface to bvptwp() | bvptwpC |
| Compile and load shared object implementing the ODE system. | compileAndLoad |
| Forcings data.frame | forcData |
| Generate C code for a function and compile it | funC |
| Get symbols from a character | getSymbols |
| Compute Jacobian of a function symbolically | jacobianSymb |
| Interface to ode() | odeC |
| Time-course data of O, O2 and O3 | oxygenData |
| Compute matrix product symbolically | prodSymb |
| reduceSensitivities | reduceSensitivities |
| Replace integer number in a character vector by other double | replaceNumbers |
| Replace a binary operator in a string by a function | replaceOperation |
| Replace symbols in a character vector by other symbols | replaceSymbols |
| Compute sensitivity equations of a function symbolically | sensitivitiesSymb |
| Generate interpolation spline for the forcings and write into list of matrices | setForcings |
| Compute matrix sumSymbolically | sumSymb |