{
  "_id": "6a4e0df0e691af43f13dfbf5",
  "Package": "cOde",
  "Type": "Package",
  "Title": "Automated C Code Generation for 'deSolve', 'bvpSolve'",
  "Version": "2026.06",
  "Date": "2026-06-07",
  "NeedsCompilation": "no",
  "Author": "Daniel Kaschek",
  "Maintainer": "Daniel Kaschek <daniel.kaschek@gmail.com>",
  "Description": "Generates all necessary C functions allowing the user to\nwork with the compiled-code interface of ode() and bvptwp().\nThe implementation supports \"forcings\" and \"events\". Also\nprovides functions to symbolically compute Jacobians,\nsensitivity equations and adjoint sensitivities being the basis\nfor sensitivity analysis.",
  "License": "GPL (>= 2)",
  "RoxygenNote": "7.3.3",
  "Encoding": "UTF-8",
  "Repository": "https://dkaschek.r-universe.dev",
  "Date/Publication": "2026-06-08 11:18:51 UTC",
  "RemoteUrl": "https://github.com/dkaschek/code",
  "RemoteRef": "HEAD",
  "RemoteSha": "7fe198d704dbae623e9fbd3865785d924ad94b56",
  "Packaged": {
    "Date": "2026-07-08 08:41:34 UTC",
    "User": "root"
  },
  "_user": "dkaschek",
  "_type": "src",
  "_file": "cOde_2026.06.tar.gz",
  "_fileid": "https://r2.ropensci.org/f04680676507afb86758ea96c632668ef1a3dadcd78c8cc5d71215ca6ab3afa1",
  "_filesize": 452248,
  "_sha256": "f04680676507afb86758ea96c632668ef1a3dadcd78c8cc5d71215ca6ab3afa1",
  "_expires": "2026-10-16T08:44:30.000Z",
  "_created": "2026-07-08T08:41:34.000Z",
  "_published": "2026-07-08T08:44:32.063Z",
  "_jobs": [
    {
      "job": 85824942447,
      "time": 125,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8162826468"
    },
    {
      "job": 85824942456,
      "time": 104,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8162817439"
    },
    {
      "job": 85824942410,
      "time": 132,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8162821760"
    },
    {
      "job": 85824942409,
      "time": 125,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8162816485"
    },
    {
      "job": 85824497291,
      "time": 140,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8162775475"
    },
    {
      "job": 85824942462,
      "time": 94,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8162813968"
    },
    {
      "job": 85824942460,
      "time": 77,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8162806183"
    },
    {
      "job": 85824942459,
      "time": 81,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8162807817"
    },
    {
      "job": 85824942486,
      "time": 100,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8162816325"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/dkaschek/actions/runs/28929357707",
  "_status": "success",
  "_upstream": "https://github.com/dkaschek/code",
  "_commit": {
    "id": "7fe198d704dbae623e9fbd3865785d924ad94b56",
    "author": "daniel <daniel@IQdesktop>",
    "committer": "daniel <daniel@IQdesktop>",
    "message": "Prepare Version 2026.06\n",
    "time": 1780917531
  },
  "_maintainer": {
    "name": "Daniel Kaschek",
    "email": "daniel.kaschek@gmail.com",
    "login": "dkaschek",
    "description": "",
    "uuid": 14802645
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "deSolve",
      "role": "Suggests"
    },
    {
      "package": "bvpSolve",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "dkaschek",
  "_selfowned": true,
  "_usedby": 3,
  "_updates": [
    {
      "week": "2026-13",
      "n": 1
    },
    {
      "week": "2026-16",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-24",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v1.1.2",
      "date": "2026-04-17"
    },
    {
      "name": "v2026.06",
      "date": "2026-06-08"
    }
  ],
  "_stars": 11,
  "_contributors": [
    {
      "user": "dkaschek",
      "count": 43,
      "uuid": 14802645
    },
    {
      "user": "wmader",
      "count": 20,
      "uuid": 18170278
    },
    {
      "user": "dlill",
      "count": 10,
      "uuid": 12697723
    },
    {
      "user": "intiquan",
      "count": 2,
      "uuid": 16134672
    },
    {
      "user": "simonbeyer1",
      "count": 1,
      "uuid": 64092903
    }
  ],
  "_userbio": {
    "uuid": 14802645,
    "type": "user",
    "name": "dkaschek",
    "followers": 11
  },
  "_downloads": {
    "count": 728,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/cOde"
  },
  "_mentions": 2,
  "_devurl": "https://github.com/dkaschek/code",
  "_searchresults": 433,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/cOde.html",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/dkaschek/code",
  "_realowner": "dkaschek",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1",
      "date": "2015-03-09"
    },
    {
      "version": "0.2",
      "date": "2015-06-10"
    },
    {
      "version": "0.2.1",
      "date": "2016-03-09"
    },
    {
      "version": "0.2.2",
      "date": "2016-05-12"
    },
    {
      "version": "0.3",
      "date": "2017-09-07"
    },
    {
      "version": "0.4.1",
      "date": "2018-08-08"
    },
    {
      "version": "1.0.0",
      "date": "2019-04-18"
    },
    {
      "version": "1.1.1",
      "date": "2022-02-23"
    }
  ],
  "_exports": [
    "adjointSymb",
    "bvptwpC",
    "funC",
    "getSymbols",
    "jacobianSymb",
    "odeC",
    "prodSymb",
    "reduceSensitivities",
    "replaceNumbers",
    "replaceOperation",
    "replaceSymbols",
    "sensitivitiesSymb",
    "setForcings",
    "sumSymb"
  ],
  "_datasets": [
    {
      "name": "forcData",
      "title": "Forcings data.frame",
      "object": "forcData",
      "file": "forcData.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "name",
        "time",
        "value"
      ],
      "rows": 8,
      "table": true,
      "tojson": true
    },
    {
      "name": "oxygenData",
      "title": "Time-course data of O, O2 and O3",
      "object": "oxygenData",
      "file": "oxygenData.rda",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "time",
        "O3D",
        "O2D",
        "OD",
        "weightO3D",
        "weightO2D",
        "weightOD"
      ],
      "rows": 16,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "cOde-package",
      "title": "Automated C Code Generation for Use with the \"deSolve\" and \"bvpSolve\" Packages",
      "topics": [
        "cOde-package",
        "cOde"
      ]
    },
    {
      "page": "adjointSymb",
      "title": "Compute adjoint equations of a function symbolically",
      "topics": [
        "adjointSymb"
      ]
    },
    {
      "page": "bvptwpC",
      "title": "Interface to bvptwp()",
      "topics": [
        "bvptwpC"
      ]
    },
    {
      "page": "compileAndLoad",
      "title": "Compile and load shared object implementing the ODE system.",
      "topics": [
        "compileAndLoad"
      ]
    },
    {
      "page": "forcData",
      "title": "Forcings data.frame",
      "topics": [
        "forcData"
      ]
    },
    {
      "page": "funC",
      "title": "Generate C code for a function and compile it",
      "topics": [
        "funC"
      ]
    },
    {
      "page": "getSymbols",
      "title": "Get symbols from a character",
      "topics": [
        "getSymbols"
      ]
    },
    {
      "page": "jacobianSymb",
      "title": "Compute Jacobian of a function symbolically",
      "topics": [
        "jacobianSymb"
      ]
    },
    {
      "page": "odeC",
      "title": "Interface to ode()",
      "topics": [
        "odeC"
      ]
    },
    {
      "page": "oxygenData",
      "title": "Time-course data of O, O2 and O3",
      "topics": [
        "oxygenData"
      ]
    },
    {
      "page": "prodSymb",
      "title": "Compute matrix product symbolically",
      "topics": [
        "prodSymb"
      ]
    },
    {
      "page": "reduceSensitivities",
      "title": "reduceSensitivities",
      "topics": [
        "reduceSensitivities"
      ]
    },
    {
      "page": "replaceNumbers",
      "title": "Replace integer number in a character vector by other double",
      "topics": [
        "replaceNumbers"
      ]
    },
    {
      "page": "replaceOperation",
      "title": "Replace a binary operator in a string by a function",
      "topics": [
        "replaceOperation"
      ]
    },
    {
      "page": "replaceSymbols",
      "title": "Replace symbols in a character vector by other symbols",
      "topics": [
        "replaceSymbols"
      ]
    },
    {
      "page": "sensitivitiesSymb",
      "title": "Compute sensitivity equations of a function symbolically",
      "topics": [
        "sensitivitiesSymb"
      ]
    },
    {
      "page": "setForcings",
      "title": "Generate interpolation spline for the forcings and write into list of matrices",
      "topics": [
        "setForcings"
      ]
    },
    {
      "page": "sumSymb",
      "title": "Compute matrix sumSymbolically",
      "topics": [
        "sumSymb"
      ]
    }
  ],
  "_readme": "https://github.com/dkaschek/code/raw/HEAD/README.md",
  "_rundeps": [],
  "_score": 7.83624307360684,
  "_indexed": true,
  "_nocasepkg": "code",
  "_universes": [
    "dkaschek"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2026.06",
      "date": "2026-07-08T08:43:39.000Z",
      "distro": "resolute",
      "commit": "7fe198d704dbae623e9fbd3865785d924ad94b56",
      "fileid": "https://r2.ropensci.org/11b718d41cdc561c55f07f35f13b912bb3cacdc5a93e9e58dfc2ec6a313adae6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dkaschek/actions/runs/28929357707"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2026.06",
      "date": "2026-07-08T08:43:19.000Z",
      "distro": "resolute",
      "commit": "7fe198d704dbae623e9fbd3865785d924ad94b56",
      "fileid": "https://r2.ropensci.org/3e287efb39b8ebe90d7f1e0cf77caa3b72781914d36f21c8ee1dc9ccd106e7f7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dkaschek/actions/runs/28929357707"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2026.06",
      "date": "2026-07-08T08:43:34.000Z",
      "commit": "7fe198d704dbae623e9fbd3865785d924ad94b56",
      "fileid": "https://r2.ropensci.org/77c58f3892c15bd82dadc88f3aa17f13ea3cfd2deabfc7ebb59cefef8f249648",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dkaschek/actions/runs/28929357707"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2026.06",
      "date": "2026-07-08T08:43:18.000Z",
      "commit": "7fe198d704dbae623e9fbd3865785d924ad94b56",
      "fileid": "https://r2.ropensci.org/cada4c32d922d12f2f129de382b824ed5ef24313a86569651f079b5fa2c7a636",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dkaschek/actions/runs/28929357707"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2026.06",
      "date": "2026-07-08T08:43:26.000Z",
      "commit": "7fe198d704dbae623e9fbd3865785d924ad94b56",
      "fileid": "https://r2.ropensci.org/c43051d4fb982d70dcc48da59f0d4bed5742061486ec39801426f61035681009",
      "status": "success",
      "buildurl": "https://github.com/r-universe/dkaschek/actions/runs/28929357707"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2026.06",
      "date": "2026-07-08T08:42:44.000Z",
      "commit": "7fe198d704dbae623e9fbd3865785d924ad94b56",
      "fileid": "https://r2.ropensci.org/4486747442b612f650fd3c568f7e93b051829e3cbf45449d6847ae57d1eb9dcc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dkaschek/actions/runs/28929357707"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2026.06",
      "date": "2026-07-08T08:42:49.000Z",
      "commit": "7fe198d704dbae623e9fbd3865785d924ad94b56",
      "fileid": "https://r2.ropensci.org/8450f186b1d7fe5e1926d014800b206b0f0ca875996130ba996d206e7d24cc70",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dkaschek/actions/runs/28929357707"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2026.06",
      "date": "2026-07-08T08:43:05.000Z",
      "commit": "7fe198d704dbae623e9fbd3865785d924ad94b56",
      "fileid": "https://r2.ropensci.org/5ef1f456900f2bd491fe52faeb31ccda30895a9a5b4f75d35a060b17573c4df6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/dkaschek/actions/runs/28929357707"
    }
  ]
}