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  "Title": "Automated C Code Generation for 'deSolve', 'bvpSolve'",
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      "date": "2015-03-09"
    },
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      "date": "2015-06-10"
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      "date": "2016-03-09"
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    "sensitivitiesSymb",
    "setForcings",
    "sumSymb"
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        "data.frame"
      ],
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        "time",
        "value"
      ],
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    },
    {
      "name": "oxygenData",
      "title": "Time-course data of O, O2 and O3",
      "object": "oxygenData",
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      "class": [
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        "array"
      ],
      "fields": [
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        "O3D",
        "O2D",
        "OD",
        "weightO3D",
        "weightO2D",
        "weightOD"
      ],
      "rows": 16,
      "table": true,
      "tojson": true
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  ],
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    {
      "page": "cOde-package",
      "title": "Automated C Code Generation for Use with the \"deSolve\" and \"bvpSolve\" Packages",
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        "cOde-package",
        "cOde"
      ]
    },
    {
      "page": "adjointSymb",
      "title": "Compute adjoint equations of a function symbolically",
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        "adjointSymb"
      ]
    },
    {
      "page": "bvptwpC",
      "title": "Interface to bvptwp()",
      "topics": [
        "bvptwpC"
      ]
    },
    {
      "page": "compileAndLoad",
      "title": "Compile and load shared object implementing the ODE system.",
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        "compileAndLoad"
      ]
    },
    {
      "page": "forcData",
      "title": "Forcings data.frame",
      "topics": [
        "forcData"
      ]
    },
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      "title": "Generate C code for a function and compile it",
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      ]
    },
    {
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      "title": "Get symbols from a character",
      "topics": [
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      ]
    },
    {
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      "title": "Compute Jacobian of a function symbolically",
      "topics": [
        "jacobianSymb"
      ]
    },
    {
      "page": "odeC",
      "title": "Interface to ode()",
      "topics": [
        "odeC"
      ]
    },
    {
      "page": "oxygenData",
      "title": "Time-course data of O, O2 and O3",
      "topics": [
        "oxygenData"
      ]
    },
    {
      "page": "prodSymb",
      "title": "Compute matrix product symbolically",
      "topics": [
        "prodSymb"
      ]
    },
    {
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      "title": "reduceSensitivities",
      "topics": [
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      ]
    },
    {
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      "topics": [
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    },
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      ]
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      ]
    },
    {
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      "title": "Compute sensitivity equations of a function symbolically",
      "topics": [
        "sensitivitiesSymb"
      ]
    },
    {
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      "topics": [
        "setForcings"
      ]
    },
    {
      "page": "sumSymb",
      "title": "Compute matrix sumSymbolically",
      "topics": [
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      ]
    }
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